species:   Rhsol
pid:       PID0502
parent:    Rhi-milR-145
paralog:   
locus:     KB317709.1:81551-81648
matures:   ['UGGGAUGGGUGGGGGUGUUUA', 'AUCAUUUUAUCACGUACU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317709.1:81551-81648

2 out of bounds
93 alignments
93 proper strand
90 stranded perfect matches

        ************************   *********************                                          
UUGACUGGGGUGGGAUGGGUGGGGGUGUUUAGCGAUUGAUCAUUUUAUCACGUACUCUGUGAUCGAGACGGAACCCCCGCGGGGGUAUUCGUCUGUGU
.(.((.((((((.(.(((...((((((.(((.....))).)))))).)))).)))))))).)...((((((((((((....))))).)))))))....
----------UGGGAUGGGUGGGGGUGUUUA------------------------------------------------------------------- l=21 a=2 c
--------------------------------------AUCAUUUUAUCACGUACU------------------------------------------ l=18 a=0 c*
----------UGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=22 a=59 ma
-------------------------------------GAUCAUUUUAUCACGUACU------------------------------------------ l=19 a=0 ma*

---------GUGGGAUGGGUGGGGGUG----------------------------------------------------------------------- l=18 a=4 
---------GUGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=23 a=19 
----------UGGGAUGGGUGGGGGUGUUUA------------------------------------------------------------------- l=21 a=2 (c)
----------UGGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=22 a=59 (ma)
----------UGGGAUGGGUGGGGGUGUUUAGa----------------------------------------------------------------- l=23 a=3 
-----------GGGAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=21 a=3 
-------------GAUGGGUGGGGGUGUUUAG------------------------------------------------------------------ l=19 a=1 
---------------------------------------------------------UGUGAUCGAGACGGAACCCCC-------------------- l=21 a=1 
---------------------------------------------------------UGUGAUCGAGACGGAACCCCCGCGGGGGUAU---------- l=31 a=1 

mb-01111
ax-1001111
ku-01
ss-111111101110
fn-111
